BtaEX0008091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69282309-69303262:-
Coord C1 exon
chr21:69303157-69303262
Coord A exon
chr21:69299485-69299633
Coord C2 exon
chr21:69282309-69282357
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATCTGAAACCACCTCTGCAGGAC
3' ss Score
5.52
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGTCAGCGACGAGAAGGACGCCCGGGGTTACCTCCAGGCCCTGGCCTCTAAGATGACCGAAGAGCTCGAGACGCTGCGGAGCTCCAGTCTGGGATCGAGGACGCTG
Seq A exon
GACCCGCTCTGGAAAGTTCGCCGCAGTCAGAAGCTGGACATGTCTGCACGGCTGGAACTGCAGTCGGCCCTGGAAGCGGAGATCCGGGCCAAGCAGCTTGTGCAGGAGGAGCTGAGGAAGGTCAAGGACGTGAACCTCTCCTTTGAAAG
Seq C2 exon
GGGATCTGAACCAGGAGTGGCTGTGCCGCTAAGGAGTATGTCTGACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-11/28=10-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF088265=DMPK_coil=PU(50.0=62.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCGACGAGAAGGAC
R:
CGGTCAGACATACTCCTTAGCG
Band lengths:
154-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development