RnoEX6029847 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135767794-135770569:-
Coord C1 exon
chr6:135770464-135770569
Coord A exon
chr6:135768933-135769081
Coord C2 exon
chr6:135767794-135767888
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCACACTGCCACAGGAC
3' ss Score
5.18
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGTCAGCGATGAGAAAGATGCCAGAGGCTACCTTCAAGCACTTGCTTCTAAGATGACCGAAGAGCTTGAGACTTTGAGAAGCTCTAGTTTGGGATCCAGGACACTG
Seq A exon
GACCCACTCTGGAAGGTCCGTCGGAGCCAGAAGCTGGACATGTCTGCGCGGCTGGAGTTGCAGTCCGCTCTCGAGGCAGAGATCCGTGCCAAGCAGCTGGTTCACGAGGAGCTGAGGAAGGTCAAAGACACCAGCCTAGCCTTCGAAAG
Seq C2 exon
CAAACTGAAGGAGTCAGAAGCCAAAAACAGGGAATTATTAGAAGAAATGCAAAGTCTGAAGAAAAGGATGGAAGAAAAATTTAGAGCAGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'34-35,'34-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
PF088265=DMPK_coil=PU(50.0=62.0)
C2:
PF088265=DMPK_coil=PD(48.4=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGATGAGAAAGATGCCA
R:
TCTGCTCTAAATTTTTCTTCCATCCT
Band lengths:
195-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]