MmuEX6083049 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111313327-111317564:-
Coord C1 exon
chr12:111317459-111317564
Coord A exon
chr12:111314424-111314572
Coord C2 exon
chr12:111313327-111313421
Length
149 bp
Sequences
Splice sites
3' ss Seq
TATTTTAACCAATGTCACAGGAT
3' ss Score
4.65
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GGTCAGCGATGAGAAAGATGCCAGAGGCTACCTTCAAGCCCTTGCTTCTAAGATGACCGAAGAGCTTGAGACCTTGCGAAGTTCTAGTTTGGGATCCAGGACACTG
Seq A exon
GATCCACTCTGGAAAGTTCGTCGGAGTCAGAAGCTGGACATGTCTGCACGGCTGGAATTGCAGTCTGCTCTTGAGGCCGAGATCCGTGCCAAACAGCTCGTTCAGGAGGAGCTGAGGAAGGTCAAAGACAGCAGCCTGGCCTTCGAAAG
Seq C2 exon
CAAACTGAAGGAATCGGAAGCGAAAAACAGGGAATTGTTAGAAGAAATGCAAAGTCTGAGGAAGAGGATGGAAGAGAAGTTTAGAGCGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.434
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.8=100)
A:
PF0157614=Myosin_tail_1=FE(13.7=100),PF088265=DMPK_coil=PU(50.0=62.0)
C2:
PF0157614=Myosin_tail_1=FE(8.9=100),PF088265=DMPK_coil=PD(48.4=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCGATGAGAAAGATGCCA
R:
CCGCTCTAAACTTCTCTTCCATCC
Band lengths:
194-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types