GgaEX1014022 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52440033-52442592:-
Coord C1 exon
chr5:52442487-52442592
Coord A exon
chr5:52440719-52440867
Coord C2 exon
chr5:52440033-52440127
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCAATAACTTACTGCAACAGGAT
3' ss Score
5.64
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTAAGTGATGAAAAGGATGCTCGTGGCTATCTCCAAGCATTAGCCTCCAAAATGACAGAAGAACTAGAGTCTTTGAGAAGTTCCAGTCTGGGGTCACGGACACTG
Seq A exon
GATCCACTTTGGAAAGTGCGACGCAGTCAGAAGTTGGATATGTCAGCTAGGCTGGAATTACAGTCTGCCCTTGATGCTGAAATTCGTGCCAAACAACTAGTTCAAGAAGAGCTACGAAAAGTTAAAGATGCAAACATATCTTTTGAAAG
Seq C2 exon
TAAATTAAAGGAATCTGAAGCAAAAAACAGAGAATTGTTGGAAGAGATGGAAGGCTTAAGGAAAAAACTGGAAGAAAAATACAGGACAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'17-22,'17-21,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.444
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.9=100)
A:
PF0157614=Myosin_tail_1=FE(13.8=100),PF088265=DMPK_coil=PU(50.0=62.0)
C2:
PF0157614=Myosin_tail_1=PD(8.7=93.9),PF088265=DMPK_coil=PD(48.4=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAAAGGATGCTCGTGGC
R:
TGAATCTGTCCTGTATTTTTCTTCCA
Band lengths:
194-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]