DreEX6044371 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18532174-18537015:-
Coord C1 exon
chr20:18536910-18537015
Coord A exon
chr20:18533114-18533262
Coord C2 exon
chr20:18532174-18532271
Length
149 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTATTGCTTGGCAGGAT
3' ss Score
6.55
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGTGAGCGATGAGAAAGACGCACGCGGCTACCTTCAGGCTCTGGCCTCCAAGATGACAGAAGAGTTGGAGTCTCTGCGCAGCTCCAGTTTGGGATCCAGAACACTG
Seq A exon
GATCCGTTGTGGAAGGTGCGTCGCAGTCAAAAGCTGGATATGTCTGCCCGTCTAGAGCTGCAGTCGGCCTTGGAAGCTGAAATCCGTGCCAAGCAACTGGTTCACGATGAACTGCGCAAGGTCAAAGCTGCCAACATCTCTTTCGAGAG
Seq C2 exon
CAAACTGAAGGACACCGAGGCCAAGAACAGAGAGTTGGAGGAACAGCTGGAGAACATGAAGAAGGAGATGGAGGAGAGCCGCTCACGATCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'22-26,'22-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.007 C2=0.936
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(11.1=83.3)
A:
PF088265=DMPK_coil=PU(50.8=62.0)
C2:
PF088265=DMPK_coil=PD(47.5=85.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGATGAGAAAGACGCAC
R:
CTTTGTCTGATCGTGAGCGGC
Band lengths:
202-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]