BtaEX0008092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69291438-69296323:-
Coord C1 exon
chr21:69296244-69296323
Coord A exon
chr21:69293166-69293255
Coord C2 exon
chr21:69291438-69291543
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCCTTTGTTTTCAGAGC
3' ss Score
11.52
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACTCAAACTTCCAGATTTTCAGGATTCTATTTTTGAGTATTTCAACACTGCACCTCTTGCACATGATCTGACATTTAGA
Seq A exon
AGCAGCTCCACTAGTGAGCAAGAAACCCAAGCTCCAAAGCCAGAGGCGTCCTTAGGGGTCTCTGTGGCCGCGGGCGCAGAGCAGCCGGAG
Seq C2 exon
CCAAAGGCACACCAGCTGAGCATCAAGTCCTTCTCCAGCCCCACGCAATGCAGCCACTGCACCTCCCTGATGGTGGGGCTGATCCGCCAGGGCTACGCCTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-14/28=13-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAAACTTCCAGATTTTCAGGA
R:
GCGGATCAGCCCCACCAT
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development