GgaEX1014035 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52436631-52439945:-
Coord C1 exon
chr5:52439866-52439945
Coord A exon
chr5:52437153-52437242
Coord C2 exon
chr5:52436631-52436705
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTGTCCCTTTTGCAGACT
3' ss Score
10.94
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTCTCAAACTTCCAGACTTTCAGGATTCCATTTTTGAATATTTCAACACCTCTCCTCTTGCACGTGATCTGACCTTCAGA
Seq A exon
ACTGGCTCCATTAGTGAGCAGGAAACACAGGGTCCCAAATCAGAAGTTTCGCCATCTACTTCAGTTGTAACTGCAGAGCAACCACAAGAA
Seq C2 exon
GAACCAATTCGGCTTCAGAGGATGCCTGCTGCTCCTTCCCCCACCATTCAGTCCATTTCTCTAGCTGTACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'20-27,'20-25,22-27=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.956 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAAACTTCCAGACTTTCAGGA
R:
TGGTACAGCTAGAGAAATGGACTGA
Band lengths:
152-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]