MmuEX6083052 @ mm9
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112545990-112549777:-
Coord C1 exon
chr12:112549698-112549777
Coord A exon
chr12:112546319-112546408
Coord C2 exon
chr12:112545990-112546067
Length
90 bp
Sequences
Splice sites
3' ss Seq
GACACCTTTTCTTTTTACAGACC
3' ss Score
10.11
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
Seq A exon
ACCAGCTCAGCTAGTGACCAGGAAACACAGGCTTCAAAGATGGACTTGTCCCCATCAGTGTCTGTAGCCACGAGCACAGAGCAGCAGGAG
Seq C2 exon
GATATGGCTCGGCCACAGCAGAGGCCGTCTCCTGTGCCACTGCCCAGCACGCAGGCCCTCGCCATGGCTGGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'21-31,'21-30,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.933 C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
GCAGTGGCACAGGAGACG
Band lengths:
122-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: