RnoEX0019002 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135762555-135766058:-
Coord C1 exon
chr6:135765979-135766058
Coord A exon
chr6:135762897-135762986
Coord C2 exon
chr6:135762555-135762632
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTTTCTTTTCACAGACT
3' ss Score
10.33
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATCCTATCTTTGAGTACTTCAACACTGCTCCTCTTGCACATGACCTGACTTTTAGA
Seq A exon
ACTAGCTCAGCTAGTGATCAGGAAACACAGGCTTCAAAGTTGGACTTGTCCCCATCAGTGTCTGTGGCCACAAGCACAGAACAGCAGGAG
Seq C2 exon
GATGCGGCTCGTTCACAGCAGAGGCCGTCTACTGTGCCGCTGCCCAACACACAGGCCCTCGCCATGGCTGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'39-40,'39-39,43-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.900 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
GGCCTGTGTGTTGGGCAG
Band lengths:
136-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]