MmuEX6083052 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111307779-111311566:-
Coord C1 exon
chr12:111311487-111311566
Coord A exon
chr12:111308108-111308197
Coord C2 exon
chr12:111307779-111307856
Length
90 bp
Sequences
Splice sites
3' ss Seq
GACACCTTTTCTTTTTACAGACC
3' ss Score
10.11
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
Seq A exon
ACCAGCTCAGCTAGTGACCAGGAAACACAGGCTTCAAAGATGGACTTGTCCCCATCAGTGTCTGTAGCCACGAGCACAGAGCAGCAGGAG
Seq C2 exon
GATATGGCTCGGCCACAGCAGAGGCCGTCTCCTGTGCCACTGCCCAGCACGCAGGCCCTCGCCATGGCTGGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'36-44,'36-43,41-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.933 C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
GCAGTGGCACAGGAGACG
Band lengths:
122-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types