GgaEX1014035 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49831512-49835326:-
Coord C1 exon
chr5:49835247-49835326
Coord A exon
chr5:49832534-49832623
Coord C2 exon
chr5:49831512-49831617
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTGTCCCTTTTGCAGACT
3' ss Score
10.94
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTCTCAAACTTCCAGACTTTCAGGATTCCATTTTTGAATATTTCAACACCTCTCCTCTTGCACGTGATCTGACCTTCAGA
Seq A exon
ACTGGCTCCATTAGTGAGCAGGAAACACAGGGTCCCAAATCAGAAGTTTCGCCATCTACTTCAGTTGTAACTGCAGAGCAACCACAAGAA
Seq C2 exon
CCTAAAGCTCACCAGCTCAATATCAAGTCATTTACAAGCCCTACTCAGTGCAGTCATTGTACCTCACTTATGGTGGGATTGGTTCGACAAGGCTATGCCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432_MULTIEX3-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.956 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCAGACTTTCAGGATTCCA
R:
GGCATAGCCTTGTCGAACCAA
Band lengths:
172-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]