BtaEX0008538 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62665318-62668242:+
Coord C1 exon
chr16:62665318-62665464
Coord A exon
chr16:62666682-62667340
Coord C2 exon
chr16:62668121-62668242
Length
659 bp
Sequences
Splice sites
3' ss Seq
AGAATTTTCATACTTTGCAGGGG
3' ss Score
6.76
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTAGCAGTCATCTGATTAGTACATCGTCTTGGCGAGATGGACAAAAATTAGTAAAGAAAATTCTTGGTCCTGCACCTAGAATAGAGCAAAAAGAGCGAAGAGCAGCATCAAGTGACAGAAGTGGAAGAGAAAGAACTACTAAATCTG
Seq A exon
GGGGCCATATTGGAAGAGCAGAGTCGGATCCTAGATTGGATGTTTCACATAGACATCGTCCACAAAACTCAGAACGTTCAAGAAGTAGAGCTCGGTCAGAAAATAATGTAAAGAAATTAGTTCCATCTCTTCCAGATAATAAACAGGAGGAAAATGCTGCCTTAAATAAGGACTTTTTACCTGTTGAAATTCGTGGAATTCTTGATGACCTCCAGTTGGATTCAGCAGCTCAGACTGCAAGACAAGAGACAGGAGAGTTACAGAATCAGAAGTCATCAGCATCCATACAAGCTCCTAGAAGTCATAGCCCAATAAAAAGAAAACCTGACAAAATAACAGCTAATGAAGATCCCCCTGTTATTTCTAAAAAGCGTCACTATGATACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAAGAAAGGAAGAGGAAACAGAATGAGGAGAAGAAGGCCCAAAAGGAGGCCACTGAGCAGAAGAACAAACGATTACAGGAGCTCTACCGGAAACAGAAAGAAGCCTTTACTAAAGTGAAAAATGTGCCTCCTTCTGAGCCATCAGCAACTAGGCGACTGCAAGAAACTTACTCCAAATTGCTTCTAGAAAAGTCATTGCTTGAAGAGCCAACTCATCAACATATTATGCAGGAAACACAG
Seq C2 exon
ACCAGACCAGGGTATCAGCCATCTGGAGAATCTGACAAAGAGAACAAAGTGCAAGAACGTCCCCCAAGCGCATCTTCCAGTAGTGACATGTCTCTGTCAGAACCTCCACAGCCTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-'10-14,'10-12,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=0.964 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTCATCTGATTAGTACATCGT
R:
AAGAGGCTGTGGAGGTTCTGA
Band lengths:
262-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development