HsaEX6035235 @ hg19
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179981064-179985105:+
Coord C1 exon
chr1:179981064-179981210
Coord A exon
chr1:179982982-179983640
Coord C2 exon
chr1:179984984-179985105
Length
659 bp
Sequences
Splice sites
3' ss Seq
TAACAGTTCATACTTTGCAGGGG
3' ss Score
5.55
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAGTAGTCATCTTATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCTCCCAGAATGGAGCCAAAAGAGCAAAGAACAGCATCAAGTGACAGAGGTGGAAGAGAAAGAACTGCTAAATCTG
Seq A exon
GGGGTCACATTGGAAGAGCAGAATCTGATCCCAGGTTGGACGTTTTACATAGACATCTTCAAAGAAACTCAGAACGTTCGAGAAGTAAATCTCGGTCTGAAAATAATATAAAGAAACTAGCTTCATCTCTTCCAGATAATAAGCAGGAGGAAAATACTGCCTTAAATAAGGACTTTTTACCTATTGAAATTCGTGGCATTCTTGATGACCTACAGCTGGATTCTACAGCTCACACTGCAAAGCAAGATACTGTAGAGTTACAGAACCAGAAGTCATCAGCACCAGTACATGCTCCTAGGAGTCACAGCCCAGTAAAAAGAAAACCTGACAAAATAACAGCTAATGAAGATCCCCCTGTTATTTCCAAAAGGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGGCAGCAGGAGGAAAGGAAGAGAAAGCAAAATGAAGAGAAGAAGGCTCAAAAGGAGGCTACAGAACAGAAAAACAAACGATTACAAGAGCTCTACCGGAAGCAGAAGGAAGCCTTTACTAAAGTAAAAAATGTCCCTCCTTCTGAGCCATCAGCAACTAGGCGACTACAGGAAACTTACTCCAAATTGCTACTAGAAAAGACCTTGCTTGAAGAGCCATCTCATCAACATGTTACGCAGGAAACACAG
Seq C2 exon
GCCAAACCAGGGTATCAGCCATCTGGAGAATCTGACAAAGAAAACAAAGTACAGGAACGTCCCCCAAGTGCATCTTCCAGTAGTGACATGTCTCTCTCAGAACCTCCACAGCCTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-'14-18,'14-16,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTACATCTTCTTGGCGAGATGG
R:
CTTGCAAGAGGCTGTGGAGG
Band lengths:
254-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)