RnoEX6044838 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73577420-73582434:-
Coord C1 exon
chr13:73582291-73582434
Coord A exon
chr13:73578751-73579409
Coord C2 exon
chr13:73577420-73577541
Length
659 bp
Sequences
Splice sites
3' ss Seq
TAAAAGTCTGTGCATTGCAGGGG
3' ss Score
5.01
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGGTAGTCGTTTGATAAGTACGTCGTCTTGGCGAGATGGACAGAAGTTAGTAAAGAGGATTCTGGGACCTGCACCTACGATGGAGCAGAGGGCGCGAAGGCCCGCGTCGAGCGACGGAAGAGGGAGAGGAAGAGGGGCGACCG
Seq A exon
GGGGCCATATTGGAAGAGCAGAATCGGACCCCAAGTTGGATGTTTCACATAAGCAGCTTCCACGAAGCTCAGAACGCTCAAGAAGTAGAGCTTGGTCTGAAAATAATGTAGTGAAGTCAGCTCTGTCCCTCCCAGACAATAAGCAGGAGGAAAATGCTGCCTTAAACAAGGACTTTTTGCCAGTTGAAATTCGTGGGATCCTTGATGACTTACAGCTAGATTCTTCAGCTCAAACCGTGAGGCAGGAGGTTGGAGAGGTACAGAATCAGAAGTCAGTGGCCTCTGTACAAGCGCCTAGGAGTCACAGCCCTGTGAAAAGAAAGCCTGACAAAATAACGGCGAATGAGGATCCACCTGTGATTTCCAAGAAGCGCCACTACGACACAGATGAGGTGCGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACATGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAGGAGCTCTACCGGAAACAGAAAGAAGCCTTCACTAAAGCAAAACCCGTGCCTCCTTCTGATCCATCCACCTCTAGACGGCTCCAGGAGACGTACTCCAAATTGCTGCTAGAGAAGACGTTGCTTGAAGAGCCAGCCCGGCAGCATGCTACACCGGAGACACAG
Seq C2 exon
ACCAGACCTGGGTATCAACCATCTGGAGAATCTGATAAAGAAAACAAAGTACAGGAACGTCCCCCAAGTGCGTCTTCCAGTAGTGACCTGTCCCTGTCAGAACCTCCACAACCTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882-'13-19,'13-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.944 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTCGTTTGATAAGTACGTCGT
R:
CTTGCAAGAGGTTGTGGAGGT
Band lengths:
264-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]