HsaEX6035235 @ hg38
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180011929-180015970:+
Coord C1 exon
chr1:180011929-180012075
Coord A exon
chr1:180013847-180014505
Coord C2 exon
chr1:180015849-180015970
Length
659 bp
Sequences
Splice sites
3' ss Seq
TAACAGTTCATACTTTGCAGGGG
3' ss Score
5.55
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTAGTAGTCATCTTATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCTCCCAGAATGGAGCCAAAAGAGCAAAGAACAGCATCAAGTGACAGAGGTGGAAGAGAAAGAACTGCTAAATCTG
Seq A exon
GGGGTCACATTGGAAGAGCAGAATCTGATCCCAGGTTGGACGTTTTACATAGACATCTTCAAAGAAACTCAGAACGTTCGAGAAGTAAATCTCGGTCTGAAAATAATATAAAGAAACTAGCTTCATCTCTTCCAGATAATAAGCAGGAGGAAAATACTGCCTTAAATAAGGACTTTTTACCTATTGAAATTCGTGGCATTCTTGATGACCTACAGCTGGATTCTACAGCTCACACTGCAAAGCAAGATACTGTAGAGTTACAGAACCAGAAGTCATCAGCACCAGTACATGCTCCTAGGAGTCACAGCCCAGTAAAAAGAAAACCTGACAAAATAACAGCTAATGAAGATCCCCCTGTTATTTCCAAAAGGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGGCAGCAGGAGGAAAGGAAGAGAAAGCAAAATGAAGAGAAGAAGGCTCAAAAGGAGGCTACAGAACAGAAAAACAAACGATTACAAGAGCTCTACCGGAAGCAGAAGGAAGCCTTTACTAAAGTAAAAAATGTCCCTCCTTCTGAGCCATCAGCAACTAGGCGACTACAGGAAACTTACTCCAAATTGCTACTAGAAAAGACCTTGCTTGAAGAGCCATCTCATCAACATGTTACGCAGGAAACACAG
Seq C2 exon
GCCAAACCAGGGTATCAGCCATCTGGAGAATCTGACAAAGAAAACAAAGTACAGGAACGTCCCCCAAGTGCATCTTCCAGTAGTGACATGTCTCTCTCAGAACCTCCACAGCCTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_MULTIEX1-7/8=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTACATCTTCTTGGCGAGATGG
R:
CTTGCAAGAGGCTGTGGAGG
Band lengths:
254-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains