MmuEX6028415 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155931508-155935961:-
Coord C1 exon
chr1:155935815-155935961
Coord A exon
chr1:155932789-155933450
Coord C2 exon
chr1:155931508-155931629
Length
662 bp
Sequences
Splice sites
3' ss Seq
TGACAGTCTGTGTGTTGCAGGGG
3' ss Score
7.25
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTAGCAGTCGTTTGATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCACCCAAGATGGAGCAAAAAGAGCGAAGACCCACATCGAATGACAGAAGTGGAAGAGAAAGAGTGGCTAAATTTG
Seq A exon
GGGGCCATATTGGAAGAGCAGAATCGGACCCCAAATTGGATGTTTCACATAAACAGCTTCCACGAAGCTCAGCACGTTCAAGAAGTAGTAGAGCTTGGTCTGAAACTAATATAGTGAAATCAGCTCTGTCCCTTCCAGACAATAAGCAGGAGGAAAGCGCTGCCTTAAACAAGGATTTTTTGCCAGTTGAAATTCGTGGGATTCTTGATGACTTACAGCTAGATTCTTCAGCTCAAGCTGTGAGGCAAGAGGCTGGAGAGGGACAGAATCAGAAGTCATCGGCCCCTGAACAAGTACCTCGGAGTCACAGCCCCGTGAAAAGAAAGCCAGACAAAATAACAGCGAACGAGGATCCGCCTGTGATTTCCAAGAAGCGCCACTATGACACAGATGAGGTACGACAGTACATTGTTAGACAGCAGGAGGAGAGGAGGAGGAGGCAACACGAAGAGAAGAAGGCTCAGAAGGAGGCTACGGAGCAGAAGAACAAACGATTACAGGAGCTCTACCGGAGACAGAGGGAAGCCTTCTCTAAAGCAAAAACTGTGCCTCCTTCTGACCCATTGGTCTCTAGACGGCTTCAGGAAACTTACTCCAAATTGCTACTAGAAAAGACTTTGCTTGAAGAACCAGCCCGTCAGCATGTTACACAGGACATACAG
Seq C2 exon
GCCAGACCTGGGTATCAGCCATCTGGAGAATCTGATAAAGAAAACAAAATACAGGAGCGTCCCCCAAGTGCGTCTTCCAGTAGTGACCTGTCCCTGTCAGAGCCTCCACAACCTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.923 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTCGTTTGATAAGTACATCT
R:
AAGAGGTTGTGGAGGCTCTGA
Band lengths:
262-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types