GgaEX7006773 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6020868-6023561:-
Coord C1 exon
chr8:6023418-6023561
Coord A exon
chr8:6021674-6022326
Coord C2 exon
chr8:6020868-6020998
Length
653 bp
Sequences
Splice sites
3' ss Seq
CAAGCCTTATTTTTTAACAGGTC
3' ss Score
8.35
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGGAAACTATGTAATAAGTGCATCCTCCTGGCGGGAGGGACAAAAGCTAGTCAAAAAGCTACTGGGTCCAGCTCCCAAAATAGAGCACGACAGAAGAGCTGTATCTAGTGACAGAACAGGACGAGAGCGAACTGCTAAGTCTG
Seq A exon
GTCGTATTGGAAGGACAGGTTCAGATTCTAGACTGGTTGTTACACAGAAAACCTCTTCAAGAAGTTCTGAGAGGTCGAGGAGTAAAGTACGATCTGAGAATAATCTGAAGAAACTGGGATCTGCCCATCCAGGTGATAACCAAGATGATCATGCCTCTGTAAATAAGGACTTTCTGCCCTTGGAGATACGTGGAATTCTTGATGACTTGCAGTTGGATTCCATGAGTACAAAGCAGGAAAAAAATGTGGAAAAGCAGAATCAGAAGTCTGTTTTGCCTCCTCAAAATACCAGGAGCCACAGTCCAACCAAAAGGAAACCAGACAAGATAGCTGCTAGTGAGGAGCCTCAAGTGATCTCTAAGAAACGTCACTATGATACGGATGAGGTTCGTCAGTACATCATCAGGCAGCAAGAGGAGAGGAAGAAGAAACAGAATGAAGAGAAGAAAGCACAAAAAGAGGCAACGGAGCAGAAGAACAAAAGACTCCAAGAGCTCTATAGAAAGCAAAAGGAGGCTTTTAGTAAAGTCAAGAACGTGCCTCCTCCTGAACCTGTGGCAGCTAAACGGTTACAAGAAACTTATTCTAAACTGTTGTTGGAACATACATTTTTAGAAGAGCCCTCTCAGCTGCCTACAGTGCAGGAAACACAG
Seq C2 exon
CCCAGACCTGGTTATCAGCCATCTGGAGAATCTGACAAAGAAAACAAGGCTCAAGAGCGTCCTCCTAGTGCGTCTTCAAGTAGTGACATGTCACTGTCAGAACCACAGCAGCAGCAGCAGCCGCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.945 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAACTATGTAATAAGTGCATCC
R:
GCTGCTGCTGCTGTGGTTC
Band lengths:
262-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]