BtaEX0009018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003132 | CHRNB4
Description
Bos taurus cholinergic receptor, nicotinic, beta 4 (CHRNB4), mRNA. [Source:RefSeq mRNA;Acc:NM_174517]
Coordinates
chr21:31518370-31525380:-
Coord C1 exon
chr21:31525271-31525380
Coord A exon
chr21:31523493-31524483
Coord C2 exon
chr21:31518370-31518510
Length
991 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGCCCCTGACCCCAGTGC
3' ss Score
6.97
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAATGGACAGACTACCGCCTGGCCTGGAACAGCTCTCGCTATGAGGGTGTGAACATCCTGAGGATCCCCGCAAATCGCGTCTGGCTGCCTGACATCGTGCTTTACAACAA
Seq A exon
TGCCGACGGGACCTACGAGGTGTCTCTCTATACCAACGTGGTGGTCCGCTCCAATGGCAGTGTCATGTGGCTGCCCCCTGCCATCTGCAAGAGCGCCTGCAAGATCGAGGTGAAGCACTTCCCCTTCGACCAGCAGAACTGCTCCCTCAAGTTCCGCTCCTGGACATACGACCACACGGAGATTGACATGGTCCTCAAGATGCCCTCGGCCAGCATGGATGACTTCACCCCCAGTGGCGAATGGGACATTGTCGCCCTCCCTGGGCGAAGGACAGTGAACCCACAGGACCCCAGTTATGTGGACGTGACTTATGACTTCATCATCAAGCGCAAGCCACTCTTCTATACCATCAACCTCATCATCCCCTGCGTGCTTATCACCTCCCTGGCCATCCTCGTCTTCTACCTGCCGTCCGACTGTGGCGAGAAGATGACGCTGTGCATCTCCGTGCTGCTGGCGCTCACCGTCTTCCTGCTGCTCATCTCCAAGATTGTGCCGCCCACCTCCCTCAACGTGCCGCTCATCGGCAAGTACCTCATGTTCACCATGGTGCTGGTCACCTTCTCCATCGTCACCAGCGTCTGCGTGCTCAACGTGCACCACCGCTCACCTAGCACGCACACCATGGCACCCTGGGTCAAGCGCTGCTTCCTACACAAGCTCCCCACCTTCCTCTTCATGAAGCGTCCCGACAGCAGCCCCTCTAGGGCCCCCCAGTCCAGCCTGGCTCGCCTGACCAAGTCTGAGGCTACCACCACCACCACCTTGGCCATGGGCCCCACCAGCTCGTCCAATCTCTATGGGAACTCCATGTACTTTGTGAACCCTGGCTTGGCAGCTCCCAAGTCTCCAGTGGCCTCAGACTCAGCGGGTATCCCCAGAGATTTCCGGCTGAGGTCTTCTGGGAGGTTCAGGCAGGATGTGCAGGAGGCTTTAGAGGGCGTCAGCTTCATTGCCCAGCACATGAAGAGTGATGATCTGGACCAGAGT
Seq C2 exon
GTCATCGAGGACTGGAAGTACGTGGCCATGGTGGTGGACCGGCTGTTCCTGTGGGTGTTCGTGGTGGTGTGTGTGCTCGGCACTGTGGGGCTCTTCCTACCTCCCCTTTTCCAGACTCACACGCCTTCTGAAGAACCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003132_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.087
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.5=100)
A:
PF103294=DUF2417=PD(13.6=21.9),PF0293211=Neur_chan_memb=FE(39.1=100)
C2:
PF0293211=Neur_chan_memb=PD(12.8=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGACAGACTACCGCCTG
R:
GGTTCTTCAGAAGGCGTGTGA
Band lengths:
247-1238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development