GgaEX1015445 @ galGal3
Exon Skipping
Gene
ENSGALG00000003005 | F1NWX4_CHICK
Description
NA
Coordinates
chr10:4552158-4557516:+
Coord C1 exon
chr10:4552158-4552267
Coord A exon
chr10:4554464-4555436
Coord C2 exon
chr10:4557376-4557516
Length
973 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTCTCTTTCATTAGTGC
3' ss Score
9.23
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAGTGGATTGATTATCGTTTGGCTTGGAAACCTTCTGACTACGAAGGAATAAATATGCTGAGAATACCTGCAAAACATATCTGGCTCCCAGACATTGTGCTTTACAATAA
Seq A exon
TGCGGATGGTACGTATGAAGTTTCGCTATACACAAACGCAATTGTACAGAACAATGGAAGCATTCGCTGGCTGCCTCCAGCAATTTACAAGAGTGCCTGCAAGATTGAGGTTAAGCATTTCCCATTTGATCAACAAAACTGCACCTTAAAGTTCCGGTCCTGGACATATGATCATACAGAAATTGATATGGTACTTAAAACTTCCATGGCAAGCATGGATGACTTCACGCCAAGTGGAGAATGGGACATTGTAGCACTCCCAGGAAGAAGAACTGTAAATCCTTTGGATCCCAATTACGTTGATGTGACATATGACTTCATTATTAAAAGGAAACCTCTTTTTTATACCATCAATCTTATAATTCCTTGTGTGCTAATTACATCCTTAGCCATCCTGGTGTTCTACTTGCCTTCAGACTGCGGTGAAAAAATGACCTTATGCATATCTGTGCTGCTTGCTTTGACCGTGTTCTTACTGCTGATCTCCAAAATTGTTCCTCCAACATCTCTAGATGTCCCACTGATTGGGAAGTATCTCATGTTTACAATGGTACTGGTGACCTTCTCGATAGTTACTAGTGTCTGCGTACTCAATGTCCACCATAGATCTCCAAGTACTCACACTATGCCTCCATGGGTAAAGCTGGTTTTCCTTGAAAGACTCCCAGCCTACCTGTTCATGAAGCGTCCAGAAAATAATTCTCCACGGCAAAAGCCGTGCAACTGCAAAAAGACAAGAGCAGAGAATCTCTGCATGGACCCAGCAGACTTCTACAAGAACTCTACTTACTTTGTGAACACAGCCTCTGCCAAAAAATACGACATGAAGATCACTGACACTCTTGACAATGTCAGCAGCCATCAAGATTTTAGGTTAAGAACAGGCACAAAATTTTCTCCTGAAGTCCAAGAAGCGATTGATGGAGTCAGTTTTATAGCAGAGCACATGAAAAGTGATGACAACGACCAGAGT
Seq C2 exon
GTCATTGAAGACTGGAAGTATGTTGCCATGGTAGTGGACAGGCTGTTTCTCTGGATATTCGTCCTTGTTTGTGTTCTGGGCACTGTTGGATTATTTCTGCAGCCGCTCTTTCAGAACCACATTGCTGCCACGAACCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003005-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.5=100)
A:
PF0293118=Neur_chan_LBD=PD(54.4=34.5),PF103294=DUF2417=WD(100=42.2),PF0293211=Neur_chan_memb=PU(86.1=63.1)
C2:
PF0293211=Neur_chan_memb=PD(13.0=66.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATTGATTATCGTTTGGCTTGG
R:
CTAAGGGTTCGTGGCAGCAAT
Band lengths:
249-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]