BtaEX0009122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73521178-73530663:-
Coord C1 exon
chr2:73530557-73530663
Coord A exon
chr2:73525877-73525993
Coord C2 exon
chr2:73521178-73521328
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGCTCTCCAAGCAACACCATTGGCCGGACTCCCTCCAGACACCCCAGCAGCCGGACCAGCCCCCTGACCTCACCCACCAACTGCTCCCATGGTGGCCTATCTCCAAG
Seq A exon
TCGGTTATGGGGTTGCAATGCCGATGGGCTGTCGAGGCACCCACCTCCCTTTCCTCAGCCTAACTCCATCCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
Seq C2 exon
CATGCTGGACTATGATACTGAAAACCTGAACTCTGAAGAAATCTATAGTTCTTTGCGTGGAGTGACAGAAGCCATTGAAAAGTTTAGTTTTCGAAGCCAAGAGGATCTGAATGAGCCCATTAAAAGAGATGGCAGAAAGGACTGCGATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAAGCAACACCATTGGC
R:
CAGTCCTTTCTGCCATCTCTT
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development