RnoEX0021470 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34542960-34554501:+
Coord C1 exon
chr13:34542960-34543066
Coord A exon
chr13:34547476-34547592
Coord C2 exon
chr13:34554351-34554501
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGATCTCCAAGCAATACCATTGGCCGGACACCTTCCCGACACCCCAGTAGCAGGACCAGCCCCTTGACCTCACCCACCAACTGTTCCCATGGGGGACTATCTCCAAG
Seq A exon
TCGGTTGTGGGGTTGGAGTGCCGACGGGCTATCGAAGCCCCCACCTCCCTTTTCTCAGCCTAACTCCATTCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
Seq C2 exon
CATGCTGGACTATGACACGGAGAACCTGAACTCTGAGGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATCGAGAAGTTCAGCTTCCGAAGCCAGGAGGATCTAAATGAGCCAATCAAGCGAGATGGCAAGAAGGATTGTGATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGCAATACCATTGGCCG
R:
CCTTCTTGCCATCTCGCTTGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]