Special

MmuEX0011509 @ mm10

Exon Skipping

Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118561011-118570999:+
Coord C1 exon
chr1:118561011-118561117
Coord A exon
chr1:118565143-118565259
Coord C2 exon
chr1:118570849-118570999
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGATCTCCAAGCAATACAATTGGCCGGACACCTTCCCGCCACCCCAGCAGCAGGACCAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGGACTATCTCCAAG
Seq A exon
TCGGTTGTGGGGTTGGAGTGCCGACGGGCTATCGAAGCCCCCACCTCCCTTTTCTCAGCCTAACTCCATTCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
Seq C2 exon
CATGCTGGACTATGATACAGAGAACCTGAACTCTGAAGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATTGAAAAGTTCAGCTTCCGAAGCCAGGAGGATCTAAATGAGCCAATCAAACGAGATGGCAAGAAGGATTGTGATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (disopred):
  C1=1.000 A=1.000 C2=0.976
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000042266





     
                   









    
Main Skipping Isoform:
ENSMUSP00000067858





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000140019, ENSMUSP00000141105
          









    
Other Skipping Isoforms:
ENSMUSP00000128089, ENSMUSP00000137137, ENSMUSP00000139526, ENSMUSP00000139619, ENSMUSP00000140095, ENSMUSP00000140167, ENSMUSP00000140593, ENSMUSP00000140665, ENSMUSP00000140860, ENSMUSP00000141582, ENSMUSP00000142203
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr2:121382208-121382324 
ALTERNATIVE
HsaEX0015473
(CLASP1)
Human
(hg19)
chr2:122139784-122139900 
ALTERNATIVE
HsaEX0015473
(CLASP1)
Rat
(rn6)
chr13:34547476-34547592 
ALTERNATIVE
RnoEX0021470
(Clasp1)
Cow
(bosTau6)
chr2:73525877-73525993 
ALTERNATIVE
BtaEX0009122
(CLASP1)
Chicken
(galGal4)
chr7:25605836-25605952 
ALTERNATIVE
GgaEX0017566
(CLASP1)
Chicken
(galGal3)
chr7:27679993-27680109 
ALTERNATIVE
GgaEX0017566
(CLASP1)
Zebrafish
(danRer10)
chr9:38466634-38466774 
ALTERNATIVE
DreEX0021917
(clasp1a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGCAATACAATTGGCCGGACA

				
R: 
ACAATCCTTCTTGCCATCTCGT

				
Band lengths: 
243-360

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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