DreEX0021917 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38463879-38467733:+
Coord C1 exon
chr9:38463879-38463985
Coord A exon
chr9:38466634-38466774
Coord C2 exon
chr9:38467586-38467733
Length
141 bp
Sequences
Splice sites
3' ss Seq
GGCCGTTCTGTGGGCAACAGTCG
3' ss Score
2.11
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AGTTCACCAAGCAATACAATGGGCCGCACACCAGCCCGGCACCCCACCAGCAGGACTAGTCCACTCACCTCACCCACAAACTGCTCTCATGGAGGTCTTTCGCCCAG
Seq A exon
TCGGTTGTGGGGTTGGGGTGTCGATGGGCTCTTAAAGCACCCCTCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTTCGTCTCACTCCTCTATTCCTGCCGGTCCCTCCTTAAGGGCTTTACGCTGCGCTCTCTCTCCAAG
Seq C2 exon
TATGCTGGAATATGACACTGAGAACATGAATTCAGATGAGATCTTTAGTTCATTGCGTGGCGTCACAGAAGCCATCCAGAGTTTCAGCTACCGCAGCCAAGAAGACCTGAATGAGCCAATCAGACGCGATGGAAAAAAGGATGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.969 A=0.929 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACCAAGCAATACAATGGGC
R:
TTTTCCATCGCGTCTGATTGG
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]