GgaEX0017566 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27676257-27684856:-
Coord C1 exon
chr7:27684750-27684856
Coord A exon
chr7:27679993-27680109
Coord C2 exon
chr7:27676257-27676407
Length
117 bp
Sequences
Splice sites
3' ss Seq
CGTTTCTCTGATCACTGCAGTCG
3' ss Score
6.48
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTTCCCCCAGCAATACTCTTGGTAGGACTCCCTCTCGGCACTCCAGCAGCAGAACCAGCCCCTTGACTTCACCTACCAACTGTTCCCATGGTGGGCTGTCTCCAAG
Seq A exon
TCGGTTCTGGGGTTGGAGTGCAGATGGGCTGTCGAAGCACCCCCCTCCCCTTTCTCAGCCTAACTCCATCCCCACCGCTCCTTCCCACAAGACTTTCAGACGCTCTTATTCTCCCAG
Seq C2 exon
TATGCTGGATTATGACACGGAGAACCTAAATTCTGATGAAATCTACAGCTCTCTTCGTGGAGTCACAGAAGCAATTGAAAAGTTTAGTTTTCGTAGTCAAGAGGACCTGAATGAACCAATCAAACGTGATGGGAAGAAAGACTGTGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCAGCAATACTCTTGGT
R:
CACAGTCTTTCTTCCCATCACGT
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]