MmuEX0011509 @ mm9
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120457588-120467576:+
Coord C1 exon
chr1:120457588-120457694
Coord A exon
chr1:120461720-120461836
Coord C2 exon
chr1:120467426-120467576
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTGATCACTGCAGTCG
3' ss Score
7.2
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGATCTCCAAGCAATACAATTGGCCGGACACCTTCCCGCCACCCCAGCAGCAGGACCAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGGACTATCTCCAAG
Seq A exon
TCGGTTGTGGGGTTGGAGTGCCGACGGGCTATCGAAGCCCCCACCTCCCTTTTCTCAGCCTAACTCCATTCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAG
Seq C2 exon
CATGCTGGACTATGATACAGAGAACCTGAACTCTGAAGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATTGAAAAGTTCAGCTTCCGAAGCCAGGAGGATCTAAATGAGCCAATCAAACGAGATGGCAAGAAGGATTGTGATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATACAATTGGCCGGACA
R:
ACAATCCTTCTTGCCATCTCGT
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: