BtaEX0009257 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005408 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:89922572-89923539:-
Coord C1 exon
chr2:89923423-89923539
Coord A exon
chr2:89923167-89923333
Coord C2 exon
chr2:89922572-89922666
Length
167 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTCCTATGTTTATAGCCG
3' ss Score
7.23
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
GGGAGGTAGACATGTAGCAGTAAAAATAGTTAAAAATGTGGATAGATATTGTGAAGCAGCTCGCTCAGAAATACAAGTTCTGGAACACTTAAATACAACAGACCCTAGCAGTACATT
Seq A exon
CCGCTGTGTCCAGATGTTGGAGTGGTTTGAGCATCATGGTCATGTCTGCATTGTGTTTGAACTATTGGGACTTAGTACTTATGACTTTATTAAGGAAAATGGTTTTCTGCCCTTTCGACTGGATCATATCAGGAGGATGGCATACCAGATATGCAAGTCTGTGAACT
Seq C2 exon
TTTTGCACAGTAATAAGTTGACTCACACAGACTTAAAACCTGAAAACATCTTATTTGTACAGTCTGACTACACAGAGGCATATAATCCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005408_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105774=UPF0560=PD(2.2=10.0),PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTAGACATGTAGCAGT
R:
TTTTGGGATTATATGCCTCTGTGT
Band lengths:
210-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development