RnoEX0021821 @ rn6
Exon Skipping
Gene
ENSRNOG00000025768 | Clk1
Description
CDC-like kinase 1 [Source:RGD Symbol;Acc:1311469]
Coordinates
chr9:65299430-65302114:-
Coord C1 exon
chr9:65301998-65302114
Coord A exon
chr9:65301745-65301898
Coord C2 exon
chr9:65299430-65299524
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTATAGCCGTTGTGTCCAGATG
3' ss Score
4.11
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGAGGTAGACATGTAGCGGTAAAAATAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCAATCGGAAATACAAGTTTTGGAACACTTAAATGCAACAGACCCCCATAGTACTTT
Seq A exon
ATGTTGGAATGGTTTGAGCACCGAGGTCACATTTGCATTGTGTTTGAACTTCTGGGGCTTAGTACTTACGATTTCATTAAGGAAAACAGCTTTCTGCCGTTTCGAATGGATCATATCAGGAAGATGGCATATCAAATATGCAAATCTGTAAACT
Seq C2 exon
TTTTGCATAGTAATAAATTGACTCACACAGACTTGAAGCCTGAAAACATCTTATTTGTGAAGTCTGACTACACAGAGGCTTATAATCCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025768-'13-13,'13-12,14-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105774=UPF0560=PD(0.1=0.0),PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTAGACATGTAGCGGT
R:
TTTTGGGATTATAAGCCTCTGTGT
Band lengths:
210-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]