GgaEX7005854 @ galGal4
Exon Skipping
Gene
ENSGALG00000028438 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr7:10799535-10800803:-
Coord C1 exon
chr7:10800687-10800803
Coord A exon
chr7:10799723-10799889
Coord C2 exon
chr7:10799535-10799629
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTGCTTTTTACAGTCG
3' ss Score
9.2
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGGAGGTAGACATGTAGCTGTGAAAATAGTAAAAAATGTGGATAGGTACTCTGAAGCAGCACGTTCAGAAGTACAAGTACTGGAACATTTAAATGCATCAGACCCCAGCAATACATA
Seq A exon
TCGCTGTGTCCAAATGTTGGAATGGTTTGAGCATCACGGCCATGTCTGCATTGTTTTTGAGCTGCTGGGACTCAGTACCTATGACTTCATTAAAGAGAACGGCTTTTTGCCATTTCGGTTGGACCACATTAGACAGATGGCGTATCAGATTTGCAAATCTGTGAACT
Seq C2 exon
TTTTACATTTAAACAAACTGACACATACAGACCTGAAACCGGAAAACATTTTATTTGTCCAGTCTGATTATGTAGAGGAGTACAACCCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028438-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
PF0006920=Pkinase=FE(17.7=100)
C2:
PF0006920=Pkinase=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTAGACATGTAGCTGTG
R:
CAGTCTGGGGTTGTACTCCTCT
Band lengths:
212-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]