BtaEX0009473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112492415-112495794:+
Coord C1 exon
chr8:112492415-112492687
Coord A exon
chr8:112492854-112492916
Coord C2 exon
chr8:112495588-112495794
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTCCCTTTTCCTCTGAAAAGGAT
3' ss Score
8.55
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
Exon sequences
Seq C1 exon
ATGGTAAACCAGAAAGACCTGGAAAGAAGACAAGTAGAAATCAGTGAAGCGATGAGGACACTTAAGTCTGAAGTGAAAGACGAGATCAGAGCCAGCCTGAAGAACCTCAACCAGTTTCTACCGGAGCTGCCAGCAGACCTGGAGGCCATTCTGGAAAGGAGCGAACACCTAGATGGAGGGCTGGAAAGCTTGAAGGAGAACTTTCCATTCGCCCTGAGTGAGAAGCCATCACCTTTTGAAGAGAAACTACATTTTTCTCGCGTTCACATAATG
Seq A exon
GATGAGCACTGGCGTGGAGAAGCGCTCCGGGAGAAGCTGCGGCACCGTGAGGACCGACTCAAG
Seq C2 exon
GCCCAGCTCCGACACTGTATGTCCAAGCAGGCAGAGGTGTTAAGCAAAGGGAAGCGGCAGACCGAGGGCACGTTACACAGCCTGAGGAGGCAGGTCGACGCCTTAGGGGAGCTGGTCACCAGCACGTCTGTGGAGTCCACGTCGTCAGCCACTCTGTCTCAGCTCGAATCTTCCCTTGCAGAGGACTCCCATCTTGGACCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417_MULTIEX1-22/24=21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.476 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTAGATGGAGGGCTGGAA
R:
ACCTCTGCCTGCTTGGACATA
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development