GgaEX6015535 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9078634-9079864:+
Coord C1 exon
chr17:9078634-9078909
Coord A exon
chr17:9079008-9079070
Coord C2 exon
chr17:9079658-9079864
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTTTCCAACAGGAT
3' ss Score
12.12
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
GTTAAGACTCAAGAAGACCTGGAAAAGAGACAAAGGGAAATAGAGAACACAGCAACATTGCTTAAACTAGAGGTTGAAGATGATATTAAAACAGGGTTTAAATCTTCAAGCCCATCTTCTCCAGAACTGTTGGAAGATTTGGAAGCGTTTTCTGCAGTAAATAAAAGTCTGCAGTGTGAATCTGACAATTTAGAGGAGACGTTTTCATTTGCTGATGCTGACAAAAGAATGTTCTCATCGGAAAAAAAGTTGGATTTTTCTCAAATCTTCATAATG
Seq A exon
GATGAACAGTGGCGTGGAGAGGCTCTCCGAGAGAAACTGCAGCATCACGAGGATCGGCTGAAG
Seq C2 exon
GCTCAGCTCCGGCACTGCATGTCCAAGCAAGTAGACGTATTGATCAGAGGAAAACAACAGACACAGGGCACCCTTCACAGCCTGAAGCGACAGGTTGATGCACTGGATGACCTGGTCAGCAGCACTTCCTCAGACTCCCTGTTCCTAGCTGATAGTTCATCAAGTCTGCTATCTCTTCGTGATGCTCTGAGTTTAACAAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=0.238 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCAGTGTGAATCTGACA
R:
ACTTGCTTGGACATGCAGTGC
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]