RnoEX0022610 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14368000-14369198:+
Coord C1 exon
chr3:14368000-14368263
Coord A exon
chr3:14368428-14368490
Coord C2 exon
chr3:14368992-14369198
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTCTCTGAAAAAGGAT
3' ss Score
7.29
5' ss Seq
AAGGTTGAC
5' ss Score
1.86
Exon sequences
Seq C1 exon
GTGGCAAACCAGAAAGACTTCGAGAGGAGGCAGATGGAGGTCAGCAATGCAATGAGGACACTGAAGTCTGAGGTGAAAGACGAAATCAGAACCAGTCTGAGGAATCTCAACCAGTTCCTTCCAGATCTACCAGCAGATCTCACAGCTATTTTGGAAAGAGATGATAACTTAAGAGAGCTGGAAAGCGTGAAAGAGAACTTCCCATTTACCACAAATGAGAGAATTTTTGAAGAAAAATCCAACTTTCCCCAAGTTCACATCATG
Seq A exon
GATGAACACCGGCGTGGAGAAGCACTCCGTGAGAGACTGCGCCACCGTGAAGATCACCTCAAG
Seq C2 exon
GCTCAGCTTCGAGACTCTATGTCTAAGCAAGCAGAAGTATTGATCAAAGGAAAGCGGCAGACAGAGGGCACCTTACACAGTCTGAGGAGACAAGTCGATGCTTTAGGAGAACTGGTCACTAGTACCTCCGTGGACTCAGCACCATCACCCAGTCTGTCTCATCTAGAGTCTTCCCTTGTAGAGGACTCCCAACATGGACATAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'58-84,'58-83,59-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=1.000 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGAAAGAGAACTTCCCA
R:
CTCTGTCTGCCGCTTTCCTTT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]