DreEX0002918 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62706928-62709654:-
Coord C1 exon
chr5:62709493-62709654
Coord A exon
chr5:62709224-62709286
Coord C2 exon
chr5:62706928-62707356
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGATAATTTGCTGTTAACAGGAT
3' ss Score
6.85
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CTGCAGAAGCAGGAGGAGGAGAGCAGTAGTGCATTCTGGGAGATCAACCGCAGCACAGCGGAGCTCGAGACGCCCTCTAGTGCCTCCTCAGACACTGACAGCCTGAAAGAGAACCGGCCTGCTGTTACACTCTCCATGGGGAATCCGGCATACAACACTGAA
Seq A exon
GATGAACAGTGGCGAGGAGAAGCGCTGAGAGAGAGACTGAGGCAGCAGGAGGACCACCTGAAG
Seq C2 exon
GTTCAGCTGCGCAGACGCATGTTCTCCCAGCAGGAGGCTCTGAGTCAGCGAAGACTGCAGACCGAGGGCAGCATTCAGGGCCTGCGCAGACGCGTGGACAAACTAGACCAGCTCCTCGGCAGCTCTTCCAAAGACTGCTCTTATCTGTCTGACCAGGAACTTCTGCCAAAACACACCAATGGACGAGATCGGAAGAAATGGTCCGCTGATCCTTTTGAATTGAAATAAGCATTCATTAGCACTTTACTTCACATACATGAAAGGAAAAAGTCCCATTATTTCTGTCAGATTATGAAAGGAGATGCAGTCAGAGGAGCAGTTTGATTCTGCAGGTACCAGAAAGAGCACTGAGGCTGGATATACTACAGCTTAAAAAAGAAAATAGTTGACCGTCGATTTCCCGCTACAAATAGGGAAGCTGAAACCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'51-54,'51-53,52-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=0.767 C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGACACTGACAGCCT
R:
CTGCAGTCTTCGCTGACTCAG
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]