GgaEX6015535 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8373978-8375229:+
Coord C1 exon
chr17:8373978-8374253
Coord A exon
chr17:8374352-8374414
Coord C2 exon
chr17:8375002-8375229
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTTTCCAACAGGAT
3' ss Score
12.12
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
GTTAAGACTCAAGAAGACCTGGAAAAGAGACAAAGGGAAATAGAGAACACAGCAACATTGCTTAAACTAGAGGTTGAAGATGATATTAAAACAGGGTTTAAATCTTCAAGCCCATCTTCTCCAGAACTGTTGGAAGATTTGGAAGCGTTTTCTGCAGTAAATAAAAGTCTGCAGTGTGAATCTGACAATTTAGAGGAGACGTTTTCATTTGCTGATGCTGACAAAAGAATGTTCTCATCGGAAAAAAAGTTGGATTTTTCTCAAATCTTCATAATG
Seq A exon
GATGAACAGTGGCGTGGAGAGGCTCTCCGAGAGAAACTGCAGCATCACGAGGATCGGCTGAAG
Seq C2 exon
GCTCAGCTCCGGCACTGCATGTCCAAGCAAGTAGACGTATTGATCAGAGGAAAACAACAGACACAGGGCACCCTTCACAGCCTGAAGCGACAGGTTGATGCACTGGATGACCTGGTCAGCAGCACTTCCTCAGACTCCCTGTTCCTAGCTGATAGTTCATCAAGTCTGCTATCTCTTCGTGATGCTCTGAGTTTAACAAAAACACAGGTAACCTCGAGTGCAATAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'64-60,'64-59,65-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCAGTGTGAATCTGACA
R:
ACTTGCTTGGACATGCAGTGC
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]