HsaEX6062829 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121173243-121175224:+
Coord C1 exon
chr9:121173243-121173509
Coord A exon
chr9:121173675-121173737
Coord C2 exon
chr9:121175018-121175224
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTATTTTCCCTCTGAGAAAGGAT
3' ss Score
-0.38
5' ss Seq
AAGGTTGCC
5' ss Score
-1.7
Exon sequences
Seq C1 exon
ATGGCAAACCAAAAAGATTTGGAGAGAAGACAAATGGAAATCAGTGATGCAATGAGGACACTTAAATCTGAGGTGAAGGATGAAATCAGAACCAGCTTGAAGAATCTTAATCAGTTTCTTCCAGAACTACCAGCAGATCTAGAAGCTATTTTGGAAAGAAACGAAAACCTAGAAGGAGAATTGGAAAGCTTGAAAGAGAACCTTCCATTTACCATGAATGAGGGACCTTTTGAAGAAAAACTGAACTTTTCCCAAGTTCACATAATG
Seq A exon
GATGAACACTGGCGTGGAGAAGCACTCCGGGAGAAACTGCGTCACCGGGAAGACCGACTCAAG
Seq C2 exon
GCCCAACTCCGACACTGTATGTCCAAGCAAGCAGAAGTATTAATTAAAGGAAAGCGGCAGACAGAGGGCACTTTACACAGTTTGAGGAGACAAGTAGATGCTTTAGGGGAATTGGTCACCAGCACCTCTGCAGATTCAGCGTCATCACCCAGTCTGTCTCAGCTGGAGTCTTCCCTCACAGAGGACTCTCAACTTGGACAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'83-102,'83-101,84-102
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=0.444 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGAATGAGGGACCTTTTGA
R:
GTAAAGTGCCCTCTGTCTGCC
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains