BtaEX0009658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17600471-17619484:+
Coord C1 exon
chr6:17600471-17600506
Coord A exon
chr6:17605283-17605327
Coord C2 exon
chr6:17619422-17619484
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCCTATCTACGTAGGGT
3' ss Score
8.99
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGAACCCGGAGAATCTGGTCGTCCAGGGCAAAAG
Seq A exon
GGTGAACCAGGGCTTCCTGGGCTTCCTGGACTTCCGGGGATAAAG
Seq C2 exon
GGAGAACCAGGTTTCATTGGTCCTCAGGGAGAACCAGGCTTACCAGGGTTACCAGGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(32.8=95.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCCGGAGAATCTGGT
R:
CCTGGTAACCCTGGTAAGCCT
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development