MmuEX0012248 @ mm10
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130530097-130546422:+
Coord C1 exon
chr3:130530097-130530132
Coord A exon
chr3:130535431-130535475
Coord C2 exon
chr3:130546360-130546422
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATGTGATTTTCCTGTGTAGGGT
3' ss Score
10.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGAACCTGGAGAATCTGGCCGCCCGGGGCAGAAG
Seq A exon
GGTGAACCAGGGCTGCCTGGGCTGCCTGGACTTCCGGGAATAAAG
Seq C2 exon
GGAGAACCAGGCTTCATTGGTCCTCAAGGAGAACCAGGGTTACCAGGGCTACCAGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(11.5=100),PF0139113=Collagen=FE(17.2=100)
A:
PF0139113=Collagen=FE(14.6=100),PF0139113=Collagen=FE(21.9=100)
C2:
PF0139113=Collagen=PD(3.1=14.3),PF0139113=Collagen=FE(31.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGAGAATCTGGC
R:
CCTGGTAGCCCTGGTAACCC
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types