GgaEX1016606 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37045841-37060846:+
Coord C1 exon
chr4:37045841-37045876
Coord A exon
chr4:37049759-37049803
Coord C2 exon
chr4:37060784-37060846
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATGCAATTTTCCTATGTAGGGT
3' ss Score
8.63
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTGAACCTGGTGAATCTGGACGGCCTGGACAAAAG
Seq A exon
GGTGAACCAGGTCTTCCTGGGCTTCCTGGACTCCCTGGGATAAAG
Seq C2 exon
GGTGAACCAGGTTTCATTGGTCCACAGGGAGAACCTGGGCTGCCAGGGTTACCAGGAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGTGAATCTGGACGG
R:
TTTGTTCCTGGTAACCCTGGC
Band lengths:
95-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]