RnoEX0023106 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235645092-235660954:+
Coord C1 exon
chr2:235645092-235645127
Coord A exon
chr2:235650089-235650133
Coord C2 exon
chr2:235660892-235660954
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATGTGATTTTCCTGTGTAGGGT
3' ss Score
10.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGAACCTGGAGAATCTGGTCGTCCGGGGCAGAAG
Seq A exon
GGTGAACCAGGGCTGCCTGGGCTGCCTGGACTTCCGGGGATAAAG
Seq C2 exon
GGAGAACCAGGCTTCATTGGTCCTCAAGGAGAACCAGGCTTACCAGGGTTACCAGGAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.2=100)
A:
PF0139113=Collagen=FE(21.9=100)
C2:
PF0139113=Collagen=FE(31.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGAGAATCTGGTC
R:
CCTGGTAACCCTGGTAAGCCT
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]