BtaEX0009670 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105120835-105133097:+
Coord C1 exon
chr8:105120835-105120888
Coord A exon
chr8:105131518-105131571
Coord C2 exon
chr8:105133044-105133097
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGAATTGTTTCTGTTTCAGGGA
3' ss Score
10.04
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGTCCTCCTGGGCCTTATGGAAATCCAGGCCTTCCTGGCCCCCCTGGAGCCAAA
Seq A exon
GGACAGAAAGGGGACCCCGGGCTCTCACCAGGAAAGGCCCACGATGGGGCAAAG
Seq C2 exon
GGCGACATGGGCTTGCCCGGGCTCACTGGGAATCCAGGACCCCTTGGACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(15.6=77.8)
A:
PF0139113=Collagen=PD(19.4=66.7),PF0139113=Collagen=FE(18.9=100)
C2:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(2.9=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCTGGGCCTTATGGAA
R:
TCCAAGGGGTCCTGGATTCC
Band lengths:
101-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development