GgaEX6015005 @ galGal3
Exon Skipping
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5325971-5331248:+
Coord C1 exon
chr17:5325971-5326024
Coord A exon
chr17:5329655-5329708
Coord C2 exon
chr17:5331195-5331248
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCTGAGTTTCTCCTTTCAGGGT
3' ss Score
9.91
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTCCTCCGGGTCCCCATGGAAACCCTGGTTCACCTGGCCCCCCAGGCCTGAAA
Seq A exon
GGTCAGAAAGGTGATCCTGGGCTGTCGCCTGGAAAAGCTCGCAGAGGACCAAAG
Seq C2 exon
GGAGACGTGGGCTTACCTGGTCTGACTGGGTTCCCTGGGCCACCTGGTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
PF0139113=Collagen=PD(23.0=77.8),PF0139113=Collagen=PU(13.6=50.0)
C2:
PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCCGGGTCCCCAT
R:
CTTTCTACCAGGTGGCCCAGG
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]