BtaEX0010207 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1166786-1168958:-
Coord C1 exon
chr27:1168813-1168958
Coord A exon
chr27:1167965-1168045
Coord C2 exon
chr27:1166786-1166899
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTATATAAATGATGTAGCAT
3' ss Score
3.26
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
GGATGGTCCTGATCAGAATTCTCCACAGTTGGGGGTTTTCAGTGGGAACACCGCCCTGGAGACAGCATACAGCTCCACCAACCAAGTCCTGCTCAAATTTCACAGTGACTTTTCAAATGGAGGTTTCTTCGTCCTCAATTTTCACG
Seq A exon
CATTTCAGCTCAAGAAATGTCAGCCTCCCCCAGCAGTTCCACAGGCAGAAATGCTTACAGAGGATGAGGATTTTGAAATAG
Seq C2 exon
GAGACTTCGTGAAGTACCAGTGCCACCCTGGGTACACGCTGTCTGGGATGGACACACTGACCTGTAAGCTCAGCTCCCAGCTACAGTTTGAAGGTTCCCTGCCGACATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'44-44,'44-43,45-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=94.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGGGTTTTCAGTGGGAAC
R:
TCAGTGTGTCCATCCCAGACA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development