HsaEX6079432 @ hg38
Exon Skipping
Gene
ENSG00000183117 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr8:3106528-3108748:-
Coord C1 exon
chr8:3108603-3108748
Coord A exon
chr8:3107718-3107798
Coord C2 exon
chr8:3106528-3106641
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCATTAATCATTTAGCAT
3' ss Score
5.22
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGACGGTCCCGATCAGAACTCACCCCAGCTGGGAGTTTTCAGTGGCAACACAGCCCTCGAAACGGCGTATAGCTCCACCAACCAAGTCCTGCTCAAGTTCCACAGCGACTTTTCAAATGGAGGCTTCTTTGTCCTCAATTTCCACG
Seq A exon
CATTTCAGCTCAAGAAATGTCAACCTCCCCCAGCGGTTCCACAGGCAGAAATGCTTACTGAGGATGATGATTTCGAAATAG
Seq C2 exon
GAGATTTTGTGAAGTACCAGTGCCACCCCGGGTACACCTTGGTGGGGACCGACATTCTGACTTGCAAGCTCAGTTCCCAGTTGCAGTTTGAGGGTTCTCTCCCAACATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183117-'97-117,'97-114,98-117
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.8=95.9)
A:
PF0008415=Sushi=PU(34.5=71.4)
C2:
PF0008415=Sushi=PD(63.8=94.9),PF0043115=CUB=PU(23.4=38.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCCACCAACCAAGTCCT
R:
AACCCTCAAACTGCAACTGGG
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains