GgaEX6032048 @ galGal3
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
NA
Coordinates
chr3:92913988-92916033:+
Coord C1 exon
chr3:92913988-92914133
Coord A exon
chr3:92915663-92915743
Coord C2 exon
chr3:92915920-92916033
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTTCACTTAAATTTGCAGCAT
3' ss Score
7.95
5' ss Seq
TAGGTGATG
5' ss Score
3.49
Exon sequences
Seq C1 exon
GGATGGTCCTGACCATAATTCACCTCAGCTGGGAGTGTTCAGTGGGAACACAGCTCTGGAAACAGCTTACAGTTCCACCAATCAAGTCCTCCTCAAATTTCACAGTGATTTTTCAACAGGAGGATTCTTTGTTCTCAATTTTCATG
Seq A exon
CATATCAGCTGAAGAAGTGCCAGCCTCCACCAATAGTTCCTCATGCAGATTTGTTTACAGAAGATGATGACTTTGGAATAG
Seq C2 exon
GAGATTTTGTCAAGTACAAATGCCATCCTGGTTTTACTCTTGTTGGACAAGATATATTAACCTGCAAACTGAATACACAATTGCAGTTTGAAGGATCTTCTCCAATTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.2=92.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACCTCAGCTGGGAGTGT
R:
ACAAGAGTAAAACCAGGATGGCA
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]