MmuEX6034698 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:15998752-16000626:-
Coord C1 exon
chr8:16000481-16000626
Coord A exon
chr8:15999780-15999860
Coord C2 exon
chr8:15998752-15998865
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCATAAACATACTACAGCAT
3' ss Score
3.08
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
GGATGGTCCTGACCAGAACTCGCCTCAGCTCGGGGTCTTCAGTGGAAACACTGCCCTTGAGACAGCCTACAGCTCCACCAACCAGGTCCTGCTCAAATTCCACAGCGATTTCTCCAATGGAGGCTTCTTTGTCCTCAATTTCCATG
Seq A exon
CATTTCAGCTGAAGAGGTGCCCGCCTCCCCCAGCAGTGCCACAGGCTGACCTGCTTACAGAAGATGAGGACTTTGAAATAG
Seq C2 exon
GGGACTTCGTGAAGTACCAGTGCCATCCAGGGTACACACTGTTGGGAAGTGACACCCTGACATGCAAGCTCAGCTCACAGCTACTGTTCCAAGGCTCTCCACCCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'74-81,'74-80,75-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.2=92.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACTGCCCTTGAGACAGC
R:
TGAGCTGAGCTTGCATGTCAG
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types