RnoEX0024832 @ rn6
Exon Skipping
Gene
ENSRNOG00000030719 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:RGD Symbol;Acc:1305103]
Coordinates
chr16:78747602-78749488:+
Coord C1 exon
chr16:78747602-78747747
Coord A exon
chr16:78748362-78748442
Coord C2 exon
chr16:78749375-78749488
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCAATATACTACAGCAT
3' ss Score
4.81
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GGATGGTCCTGACCAGAACTCGCCTCAGCTCGGGGTCTTCAGTGGAAACACTGCCCTCGAGACAGCATACAGCTCCACCAACCAGGTTCTGCTCAAATTCCACAGCGATTTCTCCAATGGAGGCTTCTTTGTCCTCAATTTTCATG
Seq A exon
CATTTCAGCTGAAGAGGTGCCCGCCTCCTCCAGTAGTGCCGCAGGCTGACCTGCTCACAGAAGATGAAGACTTTGAAATAG
Seq C2 exon
GGGACTTCGTAAAGTACCAGTGCCATCCAGGGTACACGCTGTTGGGAAGTGACACCCTGACATGCAAGCTCAGCTCACAGCTATTGTTCCAAGGCTTTCCACCCACCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030719-'38-41,'38-40,39-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(44.2=92.0)
A:
PF0008415=Sushi=PU(36.2=75.0)
C2:
PF0008415=Sushi=PD(62.1=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACTGCCCTCGAGACAG
R:
TGAGCTGAGCTTGCATGTCAG
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]