BtaEX0010544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039522 | CYCT
Description
Bos taurus cytochrome c, testis (CYCT), mRNA. [Source:RefSeq mRNA;Acc:NM_001077963]
Coordinates
chr2:18780936-18799857:+
Coord C1 exon
chr2:18780936-18781049
Coord A exon
chr2:18786401-18786575
Coord C2 exon
chr2:18799557-18799857
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATGTTTCATTGCAGAAC
3' ss Score
9.99
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAGGCGCTGCTGCGGTATCGCCAGCGTTGATCTCAGGACAGACTGTGGCTCACAGCTGCACGTTGACGCTAAAGGTTCTGCAAGGAGGCAGAGGACGGAGCCACTGGCCCTGAG
Seq A exon
AACAAAATGGCAGATGCTGAGGCAGGCAAGAAGATCTTTATTCAAAAATGTGCTCAGTGCCACACAGTGGAGAAAGGCGGAAAACACAAGACTGGTCCAAATCTCTGGGGCCTTTTTGGCAGAAAAACAGGACAAGCGCCAGGATTTTCTTATACCGAGGCAAACAAAAACAAAG
Seq C2 exon
GCATTATCTGGGGAGAGCAGACTCTGATGGAATATTTGGAGAACCCAAAGAAATATATCCCTGGAACGAAAATGATCTTTGCTGGTCTTAAAAAGAAGAGTGAGAGAGAAGATCTTATTGAGTATTTGAAACAGGCAACATCTTCATGAAATGTTCTTGCAACTTAAAAATTATTAGTTATAAACCAAAATTTTCCAATTTCATGGTTTCCAATTTTACATGTTTAAAAAATTCATATTTGATCTTTCTTGATCAGCCTGTAAGTAAGTTTAACATTTTAAAATAAAAGTTGATATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039522_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003416=Cytochrom_C=PU(53.0=93.0)
C2:
PF0003416=Cytochrom_C=PD(46.0=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCGCCAGCGTTGATCTC
R:
TCATGAAGATGTTGCCTGTTTCA
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development