MmuEX6102258 @ mm10
Exon Skipping
Gene
ENSMUSG00000056436 | Cyct
Description
cytochrome c, testis [Source:MGI Symbol;Acc:MGI:88579]
Coordinates
chr2:76353942-76357601:-
Coord C1 exon
chr2:76357573-76357601
Coord A exon
chr2:76356080-76356272
Coord C2 exon
chr2:76353942-76354236
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTTGGTCTGTAGTTT
3' ss Score
6.23
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AATACAAAGTATAAGGAAACAAAGTCCAG
Seq A exon
TTTAAGGTCTTATTGCAGAGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATCTTTGTTCAGAAATGTGCTCAGTGCCACACGGTGGAAAAAGGCGGGAAACACAAGACAGGTCCAAATCTCTGGGGCCTCTTTGGTCGAAAGACAGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
Seq C2 exon
GTGTTATCTGGTCAGAAGAAACTTTGATGGAATATTTGGAGAACCCGAAGAAATATATCCCTGGCACTAAAATGATCTTTGCTGGTATCAAAAAGAAGAGTGAGAGAGAAGATCTCATTAAGTATTTAAAACAGGCCACATCCTCATGAAGTGAAGTAGTATTTCAGCTTCAAAATATTCGCTACCAGTTTCAAATATTGTGTTTAATAAGAAGCATATCTGATCTTTTTGATCAGCCTGAAGTAATTTAAACTTGTTAAAATAAAGGTTGATATTTTTGATTGTTTAAAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056436-'5-5,'5-2,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003416=Cytochrom_C=PU(53.0=93.0)
C2:
PF0003416=Cytochrom_C=PD(46.0=92.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGTATAAGGAAACAAAGTCCAG
R:
ACACAATATTTGAAACTGGTAGCGA
Band lengths:
229-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types