HsaEX6016845 @ hg38
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
Coordinates
chr2:178014302-178108339:-
Coord C1 exon
chr2:178108254-178108339
Coord A exon
chr2:178104302-178104476
Coord C2 exon
chr2:178014302-178014460
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATGTTCCATTGCAGAGC
3' ss Score
9.96
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CGCTTGCAGCCCAGGGCGTGAGGTGCTCTTTCTGGATCGCCAGCCTCGAAGTTGAGGCGTGGACTCTGGCCAGGTGGCTGTTCCAG
Seq A exon
AGCAACATGGGAGATGCTGAAGCAGGCAAGAAGACCTTTATTCAGAAATGTGCTCAGTGCCACACAGTGGAAAAAGGTGAAAATCACAAGACTGGTCCAAATCTCTGGGGCCTCTTTGGCTGAAAAACAGGAAAAGCACCAGGATTTTCTTATACAGAGGCAAACAAAAACAAAG
Seq C2 exon
GATCGACGATTCAATGATGAAATCGACAAGCTAACTGGATACAAGACAAAATCATTATTGTGCATGCCTATCCGAAGCAGTGATGGTGAGATTATTGGTGTGGCCCAAGCGATAAATAAGATTCCTGAAGGAGCTCCATTTACTGAAGATGATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655-'0-12,'0-1,2-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.042 C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
PF0159021=GAF=PU(24.7=40.7)
C2:
PF0159021=GAF=FE(33.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCGTGAGGTGCTC
R:
TTTTCATCATCTTCAGTAAATGGAGC
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains