RnoEX6017476 @ rn6
Exon Skipping
Gene
ENSRNOG00000024457 | Pde11a
Description
phosphodiesterase 11A [Source:RGD Symbol;Acc:621793]
Coordinates
chr3:63139750-63209153:-
Coord C1 exon
chr3:63209125-63209153
Coord A exon
chr3:63207735-63207960
Coord C2 exon
chr3:63139750-63139908
Length
226 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCATTTTTTTTCTAGGTT
3' ss Score
11.6
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AAAACAAAGAATAGGGAAACCAAGTCCAG
Seq A exon
GTTTGCAAATCTGAGACTTTTTTTGGTTGGTGATTTAAGGTTTTATTGCCGAGCAAAATGGGAGATGCTGAAGCAGGCAAGAAGATTTTCATTCAGAAATGTGCGCAGTGCCACACAGTGGAGAAAGGTGGGAAGCACAAGACAGGGCCAAATCTCTGGGGCCTTTTTGGCCGAAAGACTGGACAAGCACCAGGATTTTCTTACACGGATGCAAACAAGAACAAAG
Seq C2 exon
GACCGAAGATTCAATGATGAAATTGACAAGCTGACTGGATACAAGACAAAATCACTATTGTGCATGCCTATCCGGAACAGTGACGGTGAGATTATCGGTGTGGCCCAGGCGATAAATAAGGTTCCTGAGGGTGCTCCATTTACAGAAGACGACGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024457-'1-8,'1-3,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.096 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
PF0003416=Cytochrom_C=PU(53.0=93.0)
C2:
PF0159021=GAF=FE(33.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]