HsaEX6016845 @ hg19
Exon Skipping
Gene
ENSG00000128655 | PDE11A
Description
phosphodiesterase 11A [Source:HGNC Symbol;Acc:8773]
Coordinates
chr2:178879029-178973066:-
Coord C1 exon
chr2:178972981-178973066
Coord A exon
chr2:178969029-178969203
Coord C2 exon
chr2:178879029-178879187
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATGTTCCATTGCAGAGC
3' ss Score
9.96
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CGCTTGCAGCCCAGGGCGTGAGGTGCTCTTTCTGGATCGCCAGCCTCGAAGTTGAGGCGTGGACTCTGGCCAGGTGGCTGTTCCAG
Seq A exon
AGCAACATGGGAGATGCTGAAGCAGGCAAGAAGACCTTTATTCAGAAATGTGCTCAGTGCCACACAGTGGAAAAAGGTGAAAATCACAAGACTGGTCCAAATCTCTGGGGCCTCTTTGGCTGAAAAACAGGAAAAGCACCAGGATTTTCTTATACAGAGGCAAACAAAAACAAAG
Seq C2 exon
GATCGACGATTCAATGATGAAATCGACAAGCTAACTGGATACAAGACAAAATCATTATTGTGCATGCCTATCCGAAGCAGTGATGGTGAGATTATTGGTGTGGCCCAAGCGATAAATAAGATTCCTGAAGGAGCTCCATTTACTGAAGATGATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128655-'0-3,'0-1,1-3=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.049 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
PF0159021=GAF=PU(24.7=40.7)
C2:
PF0159021=GAF=FE(33.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCGTGAGGTGCTC
R:
TTTTCATCATCTTCAGTAAATGGAGC
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)